Separating Signal from Noise in Wastewater Data: An Algorithm to Identify Community-Level COVID-19 Surges

Separating Signal from Noise in Wastewater Data: An Algorithm to Identify Community-Level COVID-19 Surges

Published: Sep 23, 2022
Publisher: MedRx iv (online ahead of print)

Ian Huff

Virginia Guidry

Ariel Christensen

Steven Berkowitz

Stacie Reckling

Sandra McLellan

Adélaïde Roguet

Isabel Mussa

Wastewater monitoring has shown promise in providing an early warning for new COVID-19 outbreaks, but to date, no approach has been validated to reliably distinguish signal from noise in wastewater data and thereby alert officials to when the data show a need for heightened public health response. We analyzed 62 weeks of data from 19 sites participating in the North Carolina Wastewater Monitoring Network to characterize wastewater metrics before and around the Delta and Omicron surges. We found that, on average, wastewater data identified new outbreaks four to five days before case data (reported based on the earlier of the symptom start date or test collection date). At most sites, correlations between wastewater and case data were similar regardless of how wastewater concentrations were normalized, and correlations were slightly stronger with county-level cases than sewershed-level cases, suggesting that officials may not need to geospatially align case data with sewershed boundaries to gain insights into disease transmission. Wastewater trend lines showed clear differences in the Delta versus Omicron surge trajectories, but no single wastewater metric (detectability, percent change, or flow-population normalized viral concentrations) adequately indicated when these surges started. After iteratively examining different combinations of these three metrics, we developed a simple algorithm that identifies unprecedented signals in the wastewater to help clarify changes in communities’ burden. Our novel algorithm accurately identified the start of both the Delta and Omicron surges in 84% of sites, potentially providing public health officials with an automated way to flag community-level COVID-19 surges.

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